5HDX: BACE-1 IN COMPLEX WITH (7AR)-7A-(5-CYANOTHIOPHEN-2-YL)-6-(4-ETHOXY-5- FLUORO-6-METHYLPYRIMIDIN-2-YL)-3-METHYL-4-OXOOCTAHYDRO-2H-PYRROLO[3, 4-D]PYRIMIDIN-2-IMINIUM
"Beta-secretase 1"( 100% identity ) with "BDBM50164506"( exact match ):

A Quick Jmol Tutorial

To bring up the menu: Right-click on Jmol window

Rotate molecule: Hold LeftMouse and drag

Translate molecule: Hold Ctrl-RightMouse and drag. (May not work on Macbook)

Center the view on a selected atom

  • Menu→Set Picking→Center
  • Left-click on desired central atom
  • Menu→Set Picking→Off

Change from Cartoon rendering of protein to "licorice bond" rendering

  • Menu→Select→Protein→All
  • Menu→Style→Bonds→0.2 Å
  • Menu→Style→Structures→Off

Change from "licorice bond" rendering of ligand to van der Waals rendering

  • Menu→Select→Hetero→Ligand
  • Menu→Style→Atoms→100% van der Waals

Save image of current view

  • Menu→Save→PNG image

To learn more about Jmol, see http://www.jmol.org, http://wiki.jmol.org.